| Study Title |
Assay Type(s) |
Example file(s) |
Source |
Creation process |
Contributors |
|
The influence of pharmacogenetics on fatty liver disease in the wistar and kyoto rats
|
| gene expression profiling using DNA microarray |
| metabolite profiling using NMR spectroscopy |
|
Griffin-et-al-PMID172039.zip
|
17203948
|
ISACreator/manual creation
|
|
|
representation in ISA-TAB Format of an Investigations (mock-up), which includes a study by Gauguier et al,
2007 17618414, in addition to the study by Griffin et al,2007:
|
| gene expression profiling using DNA microarray |
| metabolite profiling using NMR spectroscopy |
|
Inv_Griffin-PMID17203948-Gauguier-PMID17618414.zip
|
17203948
|
ISACreator/manual creation
|
|
|
Metatranscriptomes of phytoplankton blooms from an ocean acidification mesocosm experiment
|
| gene expression profiling using DNA sequencing |
| genomic sequence identification using DNA sequencing |
|
|
|
18725995
|
SRA XML - accession number SRA000266
|
|
|
ISACreator/manual creation
|
|
xsl transformation (!#)
|
|
Jack Gilbert and Dawn Field
|
| Cell based assay study |
cell function profiling using cell assays |
Wiemann_SupplFile4.xml
|
MIACA/ CA-ML
|
xsl transformation(!#) |
file supplied by Stefan Wiemann, DKFZ, Acknowldgement to: Stephanie Bechtel and
Christian Schmidt (data generation), Heiko Rosenfelder and David Zhang (bioinformatics). |
| FuGE exemplar document |
none |
Fuge-AJ.xml
|
FuGE-ML
|
xsl transformation(!#) |
file supplied by Andy Jones for initial evaluation. |
| Microarray based study |
gene expression profiling using DNA sequencing |
Amanda Microarray Data Fuge.xml
|
FuGE-ML
|
xsl transformation(!#) |
file supplied by Allyson Lister, CISBAN SYMBA. Acknowldgement to: Amanda Greenall
and
David Lydall.
. |
| Differential Gel Electrophoresis based study |
protein identification using gel electrophoresis |
DIGEexample_from_amersham_v4.xml
|
Gel-ML
|
xsl transformation(!#) |
file supplied by Frank Gibson and Andy Jones. |
| Flow cytometry based study |
cell sorting using flow cytometry |
Donor_HSC_Contribution.xml
|
FuGEFlow-ML
|
xsl transformation(!#) |
file supplied by Joseph Splindlen.Acknowldgement to: Maura Gasparetto for
providing the experimental description according to MIFlowCyt, Yu Qian, Olga Tchuvatkina, Josef Spidlen, Peter
Wilkinson, Richard Scheuermann, Ryan Brinkman, for FuGEFlow Josef Spidlen for encoding the experimental
description
into FlowML. This is work was supported by the NIH under grant EB5034. |
